PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DS_62FDD3493.1
Common NameWlip19d
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bZIP
Protein Properties Length: 150aa    MW: 16197.2 Da    PI: 9.9973
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DS_62FDD3493.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.82.8e-142886563
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                           ++ +r+ +NRe+ArrsR+RK++++eeL  ++  L+aeN +   ++  ++ e  k++ e+
  Traes_1DS_62FDD3493.1 28 RKRKRMLSNRESARRSRARKQQRMEELIAEASRLQAENARVEAQIGAYTTELTKVDGEN 86
                           57899****************************************99999998887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-192488IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.8E-132582No hitNo description
PfamPF077161.1E-102678IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.4962689IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.19E-112881No hitNo description
PROSITE patternPS0003603146IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MSSPSRRSSS PESNIDGGSG SGSAGDERKR KRMLSNRESA RRSRARKQQR MEELIAEASR  60
LQAENARVEA QIGAYTTELT KVDGENAVLR ARHGELAGRL QALGGVLEIF QVAGAPVDIP  120
EIPDPLLRPW QSPFAPQLAA AGGMPDAFQF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14047RRSRARKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3341280.0AB334128.1 Triticum aestivum Wlip19d mRNA for basic region/leucine zipper protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569062.14e-71PREDICTED: ocs element-binding factor 1-like
SwissprotP240683e-34OCS1_MAIZE; Ocs element-binding factor 1
TrEMBLA9ZPJ21e-104A9ZPJ2_WHEAT; Basic region/leucine zipper protein
STRINGMLOC_52125.12e-75(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188635100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.13e-23basic region/leucine zipper motif 53
Publications ? help Back to Top
  1. Kobayashi F, et al.
    Development of abiotic stress tolerance via bZIP-type transcription factor LIP19 in common wheat.
    J. Exp. Bot., 2008. 59(4): p. 891-905
    [PMID:18326864]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]